Index A | B | C | E | F | G | H | L | M | N | O | P | R | S | T | U | W A alpha() (in module biotapy.tl) B bar() (in module biotapy.pl) beta() (in module biotapy.tl) biotapy.datasets module biotapy.fn module biotapy.io module biotapy.pl module biotapy.pp module biotapy.tl module C contributions() (in module biotapy.fn) (in module biotapy.pl) E enterotype() (in module biotapy.datasets) enzyme() (in module biotapy.datasets) esophagus() (in module biotapy.datasets) F filter_features() (in module biotapy.pp) filter_samples() (in module biotapy.pp) func_glom() (in module biotapy.fn) functional_redundancy() (in module biotapy.fn) G global_patterns() (in module biotapy.datasets) H heatmap() (in module biotapy.pl) hmp2() (in module biotapy.datasets) L load_hierarchy() (in module biotapy.fn) M module biotapy.datasets biotapy.fn biotapy.io biotapy.pl biotapy.pp biotapy.tl N nmds() (in module biotapy.tl) O ordination() (in module biotapy.pl) P pcoa() (in module biotapy.tl) permanova() (in module biotapy.tl) R rarefy() (in module biotapy.pp) read_biom() (in module biotapy.io) read_dada2() (in module biotapy.io) read_humann() (in module biotapy.io) read_metaphlan() (in module biotapy.io) read_phyloseq() (in module biotapy.io) read_picrust2() (in module biotapy.io) read_picrust2_traits() (in module biotapy.io) read_qiime2() (in module biotapy.io) relative() (in module biotapy.pp) renorm() (in module biotapy.fn) richness() (in module biotapy.pl) S scree() (in module biotapy.pl) T tax_glom() (in module biotapy.pp) toy() (in module biotapy.datasets) toy_humann() (in module biotapy.datasets) U unifrac() (in module biotapy.tl) W write_biom() (in module biotapy.io)